genetic markers

Sequence tagged genetic markers

A registry of genetic markers that have been used in published and other reference linkage maps are being collated here. In addition, available information on markers characterised for use in diversity studies, and screening data on levels of polymorphism.


  • Information is now available for increasing numbers of Single Nucleotide Polymorphism (SNP) markers

  • Brassica marker sets

    Type Number Marker set Code Description Prefix citation Curated Download details
    RFLP 103 Osborn_lab_RFLPs_1 Osborn (1st generation) EW*%**
    WG*%***
    WR*%***
    - yes
    RFLP 279 Osborn_lab_RFLPs_2 Osborn (2nd generation) pW***
    pX***
    Parkin et al 2005 yes
    RFLP 202 Lydiate_lab_RFLPs_1 Lydiate et al. pN***
    pO***
    pR***
    ca***
    Parkin et al 2005 yes download Excel file
    Total 584            
                   
    SSR 398 BBSRC_SSRs BBSRC microsatellites Na**%**
    Ni**%**
    Ol**%**
    Ra**%**
    Lowe et al., 2004 yes download Excel file
    SSR 372 Celera_SSRs Celera public CB*****
    BRAS***
    Piquemal et al 2005
    Radoev et al 2008
    yes download Excel file
    SSR 80 AAFC_SSRs_1 AAFC freely-available sN****
    sNR%**
    sOR%***
    sR****
    sS****
    - -  
    SSR 588 FITO_SSRs_1 FITO (Wisconsin) FITO*** Iniguez-Luy et al 2009 yes download Excel file
    SSR 308 NIVTS_SSRs_1 NIVTS (Japan) BRMS*** Suwabe et al 2002 -  
    SSR 107   Other SSR sets - - -  
    SSR 972   MBrGSP anchors   CNU, NIAB Korea yes download Excel file
    Total 2825            
                   
    SNP/InDel 65 IGF_SNPs_1 EU IMSORB project link IGF****% Qiu et al 2006 yes  
    Intron polymorphism 383 UOD_SNPs_1 Arabidopsis Gene Loci At*%%% Panjabi et al 2008
    (supplementary data)
    yes  
    ACGM 88 INRA_ACGM_1 INRA link RGA***.** Brunel et al 1999;
    Source web page link
    -  
    Total 536            
    Prefix wild card key: % = Letter ; * = Number

    Total of this previous generation (pre-SNP) of public Brassica Sequence Tagged Markers = 3,945


    Additional generic molecular genetic markers

    Type Number Code Description Prefix citation Curated Download details
    AFLP -   KeyGene link %**%** Commercial yes
    RAPD 1,200   Operon Tec link OP%** Commercial yes  
    RAPD 480   WAKO link (Japanese site) WAKO%** Commercial yes  





    This Page Was Last Edited:
    08-Jan-2015