genome
Brassica Genome Browsers
- BrassEnsembl at www.brassica.info
- BRAD B. rapa genome (IVF-CAAS, B. rapa Genome)
- 1014 Brassica BACs annotated at Brassica Genome Gateway
- Daily updates from BrassicaDB
+ detail - BLAST and other tools
Brassica Genome Annotation
As the BrGSP has progressed through different stages of completion, several different versions of gene annotation have been established for Brassica rapa. These are recorded here for reference. As updated annotation is established the information will be collated in this table.| Genome | Annotation source | Date | Version | Method | Target | Example | Comments |
|---|---|---|---|---|---|---|---|
| B. rapa Chiifu-401 | JIC | Jul 09 | 1 |
JCVI/JIC Compute pipeline (SNAP & PASA) |
KBr BACs | KBrB009G01.7 | 1014 BACs |
| B. rapa Chiifu-401 | Rothamsted | Mar 10 | 1 |
JCVI/JIC/RRes Compute pipeline (SNAP & PASA) |
KBr BACs | KBrB009G01.7.rres.v1 | |
| B. rapa Chiifu-401 | BGI | Jun 10 | 0.1 |
BGI pipeline (SNAP & PASA) | Scaffolds | Bra019255 | |
| 135k Unigene set | Rothamsted | Jul 10 | 1 |
Multiple | rres002362.v1 | Used for Affymetrix Brassica Exon array |
Comparative Genomics
- AAFC Comparative Genome Viewer
- Arabidopsis Ensembl with Brassica tracks at NASC
- AtiDB Genome Browser with Brassica tracks
Physical Maps (see also BAC clone libraries)
Brassica Sequencing Projects
DNA sequences
Brassica Genome Gateway 2008
BACMan database
(Plant Genome Mapping Lab at the University of Georgia )
