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Important Notice
We now use Blat as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Brassica_rapa
dna database
135kUNIGENE
CDNA_ALL
LATESTGP
RO18
peptide database
PEP_ALL
Select the Search Tool
BLASTN
BLASTP
BLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to BLAST programs.
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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